Index

A

A() (scot.Connectivity method) (scot.connectivity.Connectivity method) absS() (scot.Connectivity method) (scot.connectivity.Connectivity method) acm() (in module scot.datatools)

activate() (scot.backendmanager.BackendManager method) angle() (scot.eegtopo.geo_spherical.Circle method) array_project_radial_to2d() (in module scot.eegtopo.projections) array_project_radial_to3d() (in module scot.eegtopo.projections) assert_zerostructure() (in module scot.tests.test_connectivity) atleast_3d() (in module scot.datatools)

B

BackendManager (class in scot.backendmanager)

bootstrap_connectivity() (in module scot.connectivity_statistics)

C

calc_g() (scot.eegtopo.topoplot.Topoplot method) calc_gmap() (scot.eegtopo.topoplot.Topoplot method) calc_legendre_factors() (scot.eegtopo.topoplot.Topoplot static method) cartesian() (in module scot.utils) cat_trials() (in module scot.datatools) check_random_state() (in module scot.utils) Cinv() (scot.Connectivity method) (scot.connectivity.Connectivity method) Circle (class in scot.eegtopo.geo_spherical) circle_intersect_circle() (scot.eegtopo.geo_spherical.Construct static method) close() (scot.eegtopo.geo_euclidean.Vector method) COH() (scot.Connectivity method) (scot.connectivity.Connectivity method) CommonTests (class in scot.tests.test_var_sklearn) compare_conditions() (scot.ooapi.Workspace method) (scot.Workspace method)

Connectivity (class in scot) (class in scot.connectivity) connectivity() (in module scot.connectivity) Construct (class in scot.eegtopo.geo_spherical) construct_1020_easycap() (in module scot.eegtopo.eegpos3d) convert() (in module scot.datasets) convert_output_() (in module scot.connectivity_statistics) copy() (scot.eegtopo.geo_euclidean.Vector method) (scot.varbase.VARBase method) create_map() (scot.eegtopo.topoplot.Topoplot method) cross() (scot.eegtopo.geo_euclidean.Vector method) csp() (in module scot.csp) cspvarica() (in module scot.varica) current_axis() (in module scot.plotting) cut_segments() (in module scot.datatools) cuthill_mckee() (in module scot.utils)

D

dDTF() (scot.Connectivity method) (scot.connectivity.Connectivity method) Defaults (class in scot.varbase) distance() (scot.eegtopo.geo_spherical.Circle method) (scot.eegtopo.geo_spherical.Line method) (scot.eegtopo.geo_spherical.Point method) distances() (scot.eegtopo.geo_spherical.Point method) do_cspvarica() (scot.ooapi.Workspace method) (scot.Workspace method)

do_ica() (scot.ooapi.Workspace method) (scot.Workspace method) do_mvarica() (scot.ooapi.Workspace method) (scot.Workspace method) dot() (scot.eegtopo.geo_euclidean.Vector method) dot_special() (in module scot.datatools) DTF() (scot.Connectivity method) (scot.connectivity.Connectivity method)

E

EEG

F

f() (in module scot.tests.test_parallel) fetch() (in module scot.datasets) ffDTF() (scot.Connectivity method) (scot.connectivity.Connectivity method) ffPDC() (scot.Connectivity method) (scot.connectivity.Connectivity method) fit() (scot.var.VAR method) (scot.varbase.VARBase method)

fit_var() (scot.ooapi.Workspace method) (scot.Workspace method) from_yw() (scot.varbase.VARBase method) fromiterable() (scot.eegtopo.geo_euclidean.Vector class method) fromvector() (scot.eegtopo.geo_euclidean.Vector class method) (scot.eegtopo.geo_spherical.Point class method)

G

g() (in module scot.tests.test_parallel) G() (scot.Connectivity method) (scot.connectivity.Connectivity method) GDTF() (scot.Connectivity method) (scot.connectivity.Connectivity method) generate() (in module scot.backend_builtin) (in module scot.backend_mne) (in module scot.backend_sklearn) generate_covsig() (in module scot.tests.generate_testdata) generate_data() (scot.tests.test_statistics.TestFunctions static method) (scot.tests.test_var.TestVAR method) get_backend() (scot.backendmanager.BackendManager method) get_bootstrap_connectivity() (scot.ooapi.Workspace method) (scot.Workspace method)

get_connectivity() (scot.ooapi.Workspace method) (scot.Workspace method) get_map() (scot.eegtopo.topoplot.Topoplot method) get_point() (scot.eegtopo.geo_spherical.Circle method) (scot.eegtopo.geo_spherical.Line method) get_radius() (scot.eegtopo.geo_spherical.Circle method) get_surrogate_connectivity() (scot.ooapi.Workspace method) (scot.Workspace method) get_tf_connectivity() (scot.ooapi.Workspace method) (scot.Workspace method) GPDC() (scot.Connectivity method) (scot.connectivity.Connectivity method)

H

h() (in module scot.tests.test_parallel)

H() (scot.Connectivity method) (scot.connectivity.Connectivity method)

I

ICA info() (scot.external.infomax_.logger static method) infomax() (in module scot.external.infomax_)

intersection() (in module scot.eegtopo.eegpos3d) is_stable() (scot.varbase.VARBase method) items() (scot.backendmanager.BackendManager method)

J

jackknife_connectivity() (in module scot.connectivity_statistics)

K

keep_sources() (scot.ooapi.Workspace method) (scot.Workspace method)

keys() (scot.eegtopo.tools.Struct method)

L

Line (class in scot.eegtopo.geo_spherical) line_intersect_circle() (scot.eegtopo.geo_spherical.Construct static method) line_intersect_line() (scot.eegtopo.geo_spherical.Construct static method) list (scot.eegtopo.geo_spherical.Point property) load_configuration() (in module scot.config)

loadmat() (in module scot.matfiles) logG() (scot.Connectivity method) (scot.connectivity.Connectivity method) logger (class in scot.external.infomax_) logS() (scot.Connectivity method) (scot.connectivity.Connectivity method)

M

make_nfold() (in module scot.xvschema) MaxNLocator() (in module scot.plotting) MD5MismatchError memoize (class in scot.utils) midpoint() (scot.eegtopo.geo_spherical.Construct static method) module scot scot.backend_builtin scot.backend_mne scot.backend_sklearn scot.backendmanager scot.config scot.connectivity scot.connectivity_statistics scot.csp scot.datasets scot.datatools scot.eegtopo scot.eegtopo.eegpos3d scot.eegtopo.geo_euclidean scot.eegtopo.geo_spherical scot.eegtopo.projections scot.eegtopo.tools scot.eegtopo.topoplot scot.eegtopo.warp_layout scot.external scot.external.infomax_ scot.matfiles scot.ooapi scot.parallel scot.pca scot.plainica scot.plotting scot.tests scot.tests.generate_testdata scot.tests.test_connectivity scot.tests.test_csp scot.tests.test_datatools scot.tests.test_eegtopo scot.tests.test_eegtopo.test_geometry scot.tests.test_eegtopo.test_geometry.test_euclidean scot.tests.test_eegtopo.test_geometry.test_spherical scot.tests.test_eegtopo.test_warp scot.tests.test_ooapi scot.tests.test_parallel scot.tests.test_pca scot.tests.test_plainica scot.tests.test_plotting scot.tests.test_statistics scot.tests.test_utils scot.tests.test_var scot.tests.test_var_builtin scot.tests.test_var_sklearn scot.tests.test_varica scot.tests.test_xvschema scot.utils scot.var scot.varbase scot.varica scot.xvschema

multitrial() (in module scot.xvschema) MVAR MVARICA mvarica() (in module scot.varica)

N

names() (scot.backendmanager.BackendManager method) new_figure() (in module scot.plotting) norm() (scot.eegtopo.geo_euclidean.Vector method)

norm2() (scot.eegtopo.geo_euclidean.Vector method) normalize() (scot.eegtopo.geo_euclidean.Vector method) normalized() (scot.eegtopo.geo_euclidean.Vector method)

O

optimize() (scot.var.VAR method) (scot.varbase.VARBase method) optimize_delta_bisection() (scot.var.VAR method)

optimize_order() (scot.var.VAR method) optimize_var() (scot.ooapi.Workspace method) (scot.Workspace method)

P

parallel_loop() (in module scot.parallel) PCA pca() (in module scot.pca) pca_eig() (in module scot.pca) pca_svd() (in module scot.pca) pCOH() (scot.Connectivity method) (scot.connectivity.Connectivity method) PDC() (scot.Connectivity method) (scot.connectivity.Connectivity method) PDCF() (scot.Connectivity method) (scot.connectivity.Connectivity method) PHI() (scot.Connectivity method) (scot.connectivity.Connectivity method) plainica() (in module scot.plainica) plot_circles() (scot.eegtopo.topoplot.Topoplot method) plot_circular() (in module scot.plotting) plot_connectivity_significance() (in module scot.plotting) plot_connectivity_spectrum() (in module scot.plotting) plot_connectivity_surrogate() (scot.ooapi.Workspace method) (scot.Workspace method)

plot_connectivity_timespectrum() (in module scot.plotting) plot_connectivity_topos() (in module scot.plotting) (scot.ooapi.Workspace method) (scot.Workspace method) plot_head() (scot.eegtopo.topoplot.Topoplot method) plot_locations() (scot.eegtopo.topoplot.Topoplot method) plot_map() (scot.eegtopo.topoplot.Topoplot method) plot_source_topos() (scot.ooapi.Workspace method) (scot.Workspace method) plot_sources() (in module scot.plotting) plot_topo() (in module scot.plotting) plot_whiteness() (in module scot.plotting) plotting (scot.ooapi.Workspace property) (scot.Workspace property) Point (class in scot.eegtopo.geo_spherical) predict() (scot.varbase.VARBase method) prepare_topoplots() (in module scot.plotting) project_radial_to2d() (in module scot.eegtopo.projections) project_radial_to3d() (in module scot.eegtopo.projections)

R

randomize_phase() (in module scot.datatools) register() (scot.backendmanager.BackendManager method) remove_sources() (scot.ooapi.Workspace method) (scot.Workspace method)

ResultICA (class in scot.plainica) rotate() (scot.eegtopo.geo_euclidean.Vector method) rotated() (scot.eegtopo.geo_euclidean.Vector method)

S

S() (scot.Connectivity method) (scot.connectivity.Connectivity method) scot module scot.backend_builtin module scot.backend_mne module scot.backend_sklearn module scot.backendmanager module scot.config module scot.connectivity module scot.connectivity_statistics module scot.csp module scot.datasets module scot.datatools module scot.eegtopo module scot.eegtopo.eegpos3d module scot.eegtopo.geo_euclidean module scot.eegtopo.geo_spherical module scot.eegtopo.projections module scot.eegtopo.tools module scot.eegtopo.topoplot module scot.eegtopo.warp_layout module scot.external module scot.external.infomax_ module scot.matfiles module scot.ooapi module scot.parallel module scot.pca module scot.plainica module scot.plotting module scot.tests module scot.tests.generate_testdata module scot.tests.test_connectivity module scot.tests.test_csp module scot.tests.test_datatools module scot.tests.test_eegtopo module scot.tests.test_eegtopo.test_geometry module scot.tests.test_eegtopo.test_geometry.test_euclidean module scot.tests.test_eegtopo.test_geometry.test_spherical module scot.tests.test_eegtopo.test_warp module scot.tests.test_ooapi module scot.tests.test_parallel module scot.tests.test_pca module

scot.tests.test_plainica module scot.tests.test_plotting module scot.tests.test_statistics module scot.tests.test_utils module scot.tests.test_var module scot.tests.test_var_builtin module scot.tests.test_var_sklearn module scot.tests.test_varica module scot.tests.test_xvschema module scot.utils module scot.var module scot.varbase module scot.varica module scot.xvschema module set_data() (scot.ooapi.Workspace method) (scot.Workspace method) set_locations() (scot.eegtopo.topoplot.Topoplot method) (scot.ooapi.Workspace method) (scot.Workspace method) set_map() (scot.eegtopo.topoplot.Topoplot method) set_premixing() (scot.ooapi.Workspace method) (scot.Workspace method) set_used_labels() (scot.ooapi.Workspace method) (scot.Workspace method) set_values() (scot.eegtopo.topoplot.Topoplot method) setUp() (scot.tests.test_connectivity.TestFunctionality method) (scot.tests.test_csp.TestDefaults method) (scot.tests.test_csp.TestDimensionalityReduction method) (scot.tests.test_csp.TestFunctionality method) (scot.tests.test_datatools.TestDataMangling method) (scot.tests.test_datatools.TestRegressions method) (scot.tests.test_eegtopo.test_geometry.test_euclidean.TestVector method) (scot.tests.test_eegtopo.test_geometry.test_spherical.TestClasses method) (scot.tests.test_eegtopo.test_warp.TestWarpLocations method) (scot.tests.test_ooapi.TestMVARICA method) (scot.tests.test_parallel.TestFunctions method) (scot.tests.test_pca.TestDefaults method) (scot.tests.test_pca.TestDimensionalityReduction method) (scot.tests.test_pca.TestFunctionality method) (scot.tests.test_plainica.TestICA method) (scot.tests.test_plotting.TestFunctionality method) (scot.tests.test_statistics.TestFunctions method) (scot.tests.test_utils.TestUtils method) (scot.tests.test_var.TestVAR method) (scot.tests.test_var_builtin.TestVAR method) (scot.tests.test_var_sklearn.CommonTests method) (scot.tests.test_var_sklearn.TestElasticNet method) (scot.tests.test_var_sklearn.TestLasso method) (scot.tests.test_var_sklearn.TestLassoLars method) (scot.tests.test_var_sklearn.TestRidge method) (scot.tests.test_var_sklearn.TestRidgeCV method) (scot.tests.test_varica.TestCSPVARICA method) (scot.tests.test_varica.TestMVARICA method) (scot.tests.test_xvschema.TestBuiltin method) (scot.tests.test_xvschema.TestSklearn method) show_plots() (in module scot.plotting) (scot.ooapi.Workspace method) (scot.Workspace method) significance_fdr() (in module scot.connectivity_statistics) simulate() (scot.varbase.VARBase method) singletrial() (in module scot.xvschema) sPDC() (scot.Connectivity method) (scot.connectivity.Connectivity method) splitset() (in module scot.xvschema) Struct (class in scot.eegtopo.tools) surrogate_connectivity() (in module scot.connectivity_statistics)

T

tearDown() (scot.tests.test_connectivity.TestFunctionality method) (scot.tests.test_csp.TestDefaults method) (scot.tests.test_csp.TestDimensionalityReduction method) (scot.tests.test_csp.TestFunctionality method) (scot.tests.test_datatools.TestDataMangling method) (scot.tests.test_datatools.TestRegressions method) (scot.tests.test_eegtopo.test_geometry.test_euclidean.TestVector method) (scot.tests.test_eegtopo.test_geometry.test_spherical.TestClasses method) (scot.tests.test_eegtopo.test_warp.TestWarpLocations method) (scot.tests.test_ooapi.TestMVARICA method) (scot.tests.test_parallel.TestFunctions method) (scot.tests.test_pca.TestDefaults method) (scot.tests.test_pca.TestDimensionalityReduction method) (scot.tests.test_pca.TestFunctionality method) (scot.tests.test_plainica.TestICA method) (scot.tests.test_plotting.TestFunctionality method) (scot.tests.test_statistics.TestFunctions method) (scot.tests.test_utils.TestUtils method) (scot.tests.test_var.TestVAR method) (scot.tests.test_var_builtin.TestVAR method) (scot.tests.test_var_sklearn.CommonTests method) (scot.tests.test_varica.TestCSPVARICA method) (scot.tests.test_varica.TestMVARICA method) (scot.tests.test_xvschema.TestBuiltin method) (scot.tests.test_xvschema.TestSklearn method) test_abstract() (scot.tests.test_var.TestVAR method) test_access() (scot.tests.test_eegtopo.test_geometry.test_euclidean.TestVector method) test_acm_1d() (scot.tests.test_datatools.TestDataMangling method) test_alpha() (scot.tests.test_var_sklearn.TestRidgeCV method) test_application() (scot.tests.test_xvschema.TestSklearn method) test_bisection_invalid() (scot.tests.test_var_builtin.TestVAR method) test_bisection_overdetermined() (scot.tests.test_var_builtin.TestVAR method) test_bisection_underdetermined() (scot.tests.test_var_builtin.TestVAR method) test_bootstrap() (scot.tests.test_statistics.TestFunctions method) test_bootstrap_difference_and_fdr() (scot.tests.test_statistics.TestFunctions method) test_cat_trials() (scot.tests.test_datatools.TestDataMangling method) test_cat_trials_dimensions() (scot.tests.test_datatools.TestRegressions method) test_circular() (scot.tests.test_plotting.TestFunctionality method) test_connectivity_significance() (scot.tests.test_plotting.TestFunctionality method) test_connectivity_spectrum() (scot.tests.test_plotting.TestFunctionality method) test_connectivity_timespectrum() (scot.tests.test_plotting.TestFunctionality method) test_cut_epochs() (scot.tests.test_datatools.TestDataMangling method) test_cuthill() (scot.tests.test_utils.TestUtils method) test_dot_special() (scot.tests.test_datatools.TestDataMangling method) test_eeglocations() (scot.tests.test_eegtopo.test_warp.TestWarpLocations method) test_fit() (scot.tests.test_var_builtin.TestVAR method) (scot.tests.test_var_sklearn.CommonTests method) test_fit_regularized() (scot.tests.test_var_builtin.TestVAR method) test_interface() (scot.tests.test_eegtopo.test_warp.TestWarpLocations method) test_invariance() (scot.tests.test_eegtopo.test_warp.TestWarpLocations method) test_jackknife() (scot.tests.test_statistics.TestFunctions method) test_kfold() (scot.tests.test_xvschema.TestSklearn method) test_leave1out() (scot.tests.test_xvschema.TestSklearn method) test_memoize() (scot.tests.test_utils.TestUtils method) test_multitrial() (scot.tests.test_xvschema.TestBuiltin method) test_nfold() (scot.tests.test_xvschema.TestBuiltin method) test_optimize() (scot.tests.test_var_builtin.TestVAR method) test_output() (scot.tests.test_parallel.TestFunctions method) test_parallel_loop() (scot.tests.test_parallel.TestFunctions method) test_plotting() (scot.tests.test_ooapi.TestMVARICA method) test_predict() (scot.tests.test_var.TestVAR method) test_premixing() (scot.tests.test_ooapi.TestMVARICA method) test_random_state() (scot.tests.test_ooapi.TestMVARICA method) test_residuals() (scot.tests.test_var_builtin.TestVAR method) test_simulate() (scot.tests.test_var.TestVAR method) test_singletrial() (scot.tests.test_xvschema.TestBuiltin method) test_source_selection() (scot.tests.test_ooapi.TestMVARICA method) test_splitset() (scot.tests.test_xvschema.TestBuiltin method) test_stable() (scot.tests.test_var.TestVAR method) test_surrogate() (scot.tests.test_statistics.TestFunctions method) test_topoplots() (scot.tests.test_plotting.TestFunctionality method)

test_whiteness() (in module scot.varbase) (scot.tests.test_plotting.TestFunctionality method) (scot.tests.test_var.TestVAR method) (scot.varbase.VARBase method) test_yulewalker() (scot.tests.test_var.TestVAR method) testBackendRegression() (scot.tests.test_ooapi.TestMVARICA method) TestBuiltin (class in scot.tests.test_xvschema) testCircle() (scot.tests.test_eegtopo.test_geometry.test_spherical.TestClasses method) testClass() (scot.tests.test_connectivity.TestFunctionality method) TestClasses (class in scot.tests.test_eegtopo.test_geometry.test_spherical) testComponentSeparation() (scot.tests.test_csp.TestFunctionality method) testConstruct() (scot.tests.test_eegtopo.test_geometry.test_spherical.TestClasses method) TestCSPVARICA (class in scot.tests.test_varica) TestDataMangling (class in scot.tests.test_datatools) testDecorrelation() (scot.tests.test_pca.TestFunctionality method) TestDefaults (class in scot.tests.test_csp) (class in scot.tests.test_pca) TestDimensionalityReduction (class in scot.tests.test_csp) (class in scot.tests.test_pca) TestElasticNet (class in scot.tests.test_var_sklearn) testExceptions() (scot.tests.test_ooapi.TestMVARICA method) testFit() (scot.tests.test_varica.TestCSPVARICA method) (scot.tests.test_varica.TestMVARICA method) testFunction() (scot.tests.test_connectivity.TestFunctionality method) TestFunctionality (class in scot.tests.test_connectivity) (class in scot.tests.test_csp) (class in scot.tests.test_pca) (class in scot.tests.test_plotting) testFunctionality() (scot.tests.test_ooapi.TestMVARICA method) TestFunctions (class in scot.tests.test_parallel) (class in scot.tests.test_statistics) TestICA (class in scot.tests.test_plainica) testIdentity() (scot.tests.test_pca.TestFunctionality method) testInputSafety() (scot.tests.test_csp.TestDefaults method) (scot.tests.test_pca.TestDefaults method) testInterface() (scot.tests.test_plainica.TestICA method) (scot.tests.test_varica.TestCSPVARICA method) (scot.tests.test_varica.TestMVARICA method) testInvalidInput() (scot.tests.test_csp.TestDefaults method) testInverse() (scot.tests.test_csp.TestDefaults method) (scot.tests.test_pca.TestDefaults method) TestLasso (class in scot.tests.test_var_sklearn) TestLassoLars (class in scot.tests.test_var_sklearn) testLine() (scot.tests.test_eegtopo.test_geometry.test_spherical.TestClasses method) testModelIdentification() (scot.tests.test_ooapi.TestMVARICA method) (scot.tests.test_plainica.TestICA method) (scot.tests.test_varica.TestMVARICA method) TestMVARICA (class in scot.tests.test_ooapi) (class in scot.tests.test_varica) testOutput() (scot.tests.test_csp.TestDimensionalityReduction method) testOutputSizes() (scot.tests.test_csp.TestDefaults method) (scot.tests.test_csp.TestDimensionalityReduction method) (scot.tests.test_pca.TestDefaults method) (scot.tests.test_pca.TestDimensionalityReduction method) testPoint() (scot.tests.test_eegtopo.test_geometry.test_spherical.TestClasses method) testPseudoInverse() (scot.tests.test_csp.TestDimensionalityReduction method) (scot.tests.test_pca.TestDimensionalityReduction method) TestRegressions (class in scot.tests.test_datatools) TestRidge (class in scot.tests.test_var_sklearn) TestRidgeCV (class in scot.tests.test_var_sklearn) TestSklearn (class in scot.tests.test_xvschema) testSorting() (scot.tests.test_pca.TestDimensionalityReduction method) (scot.tests.test_pca.TestFunctionality method) testTrivia() (scot.tests.test_ooapi.TestMVARICA method) TestUtils (class in scot.tests.test_utils) TestVAR (class in scot.tests.test_var) (class in scot.tests.test_var_builtin) TestVector (class in scot.tests.test_eegtopo.test_geometry.test_euclidean) TestWarpLocations (class in scot.tests.test_eegtopo.test_warp) Topoplot (class in scot.eegtopo.topoplot) topoplot() (in module scot.eegtopo.topoplot)

V

VAR (class in scot.var)

VARBase (class in scot.varbase) Vector (class in scot.eegtopo.geo_euclidean) vector (scot.eegtopo.geo_spherical.Point property)

W

warp_locations() (in module scot.eegtopo.warp_layout)

Workspace (class in scot) (class in scot.ooapi)

X

xvschema() (scot.varbase.Defaults method)